NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,392.3 |
| Mean read quality |
12.9 |
| Median read length |
782.0 |
| Median read quality |
13.0 |
| Number of reads |
213,094.0 |
| Read length N50 |
2,517.0 |
| STDEV read length |
1,778.7 |
| Total bases |
296,691,704.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
212446 (99.7%) 296.6Mb |
| >Q7 |
208035 (97.6%) 296.2Mb |
| >Q10 |
176766 (83.0%) 278.2Mb |
| >Q12 |
133018 (62.4%) 241.6Mb |
| >Q15 |
52775 (24.8%) 136.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.3 (227) |
| 2 |
26.1 (31626) |
| 3 |
24.8 (819) |
| 4 |
24.5 (280) |
| 5 |
24.2 (4018) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
43826 (11.9) |
| 2 |
36668 (9.1) |
| 3 |
31626 (26.1) |
| 4 |
29070 (17.3) |
| 5 |
28907 (9.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths