NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,217.5 |
| Mean read quality |
11.9 |
| Median read length |
576.0 |
| Median read quality |
11.9 |
| Number of reads |
68,663.0 |
| Read length N50 |
2,498.0 |
| STDEV read length |
1,767.7 |
| Total bases |
83,597,299.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
68415 (99.6%) 83.6Mb |
| >Q7 |
66742 (97.2%) 83.4Mb |
| >Q10 |
51496 (75.0%) 76.3Mb |
| >Q12 |
33381 (48.6%) 62.0Mb |
| >Q15 |
9230 (13.4%) 26.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
23.1 (786) |
| 2 |
22.1 (487) |
| 3 |
22.0 (6914) |
| 4 |
21.8 (5899) |
| 5 |
21.6 (3920) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
34419 (14.9) |
| 2 |
30896 (13.0) |
| 3 |
29882 (16.9) |
| 4 |
26888 (15.5) |
| 5 |
26148 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths