NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,270.9 |
| Mean read quality |
12.9 |
| Median read length |
340.0 |
| Median read quality |
13.9 |
| Number of reads |
11,233.0 |
| Read length N50 |
8,554.0 |
| STDEV read length |
14,060.5 |
| Total bases |
14,275,886.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8976 (79.9%) 7.2Mb |
| >Q7 |
8211 (73.1%) 5.6Mb |
| >Q10 |
7211 (64.2%) 5.1Mb |
| >Q12 |
6484 (57.7%) 4.8Mb |
| >Q15 |
4994 (44.5%) 4.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
35.9 (140) |
| 2 |
35.4 (1238) |
| 3 |
34.8 (349) |
| 4 |
34.7 (378) |
| 5 |
34.3 (622) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
780297 (4.3) |
| 2 |
498451 (4.6) |
| 3 |
436420 (2.7) |
| 4 |
379672 (4.3) |
| 5 |
377323 (3.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths