NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,127.8 |
| Mean read quality |
10.9 |
| Median read length |
711.0 |
| Median read quality |
11.0 |
| Number of reads |
101,235.0 |
| Read length N50 |
1,674.0 |
| STDEV read length |
5,863.5 |
| Total bases |
114,173,922.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
81717 (80.7%) 91.9Mb |
| >Q7 |
71579 (70.7%) 78.6Mb |
| >Q10 |
55870 (55.2%) 62.4Mb |
| >Q12 |
45381 (44.8%) 51.5Mb |
| >Q15 |
27578 (27.2%) 32.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
34.3 (382) |
| 2 |
33.9 (362) |
| 3 |
33.1 (706) |
| 4 |
33.1 (777) |
| 5 |
33.1 (159) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
767578 (3.6) |
| 2 |
765295 (5.6) |
| 3 |
525896 (5.8) |
| 4 |
496225 (4.0) |
| 5 |
459729 (2.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths