NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,184.3 |
| Mean read quality |
10.1 |
| Median read length |
693.0 |
| Median read quality |
10.3 |
| Number of reads |
7,624.0 |
| Read length N50 |
2,011.0 |
| STDEV read length |
1,650.9 |
| Total bases |
9,029,280.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5523 (72.4%) 7.4Mb |
| >Q7 |
4882 (64.0%) 6.7Mb |
| >Q10 |
3935 (51.6%) 5.6Mb |
| >Q12 |
3205 (42.0%) 4.7Mb |
| >Q15 |
1887 (24.8%) 2.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
30.2 (838) |
| 2 |
30.1 (342) |
| 3 |
28.3 (1000) |
| 4 |
28.2 (186) |
| 5 |
27.8 (209) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
28049 (2.9) |
| 2 |
26363 (3.3) |
| 3 |
26174 (3.0) |
| 4 |
25772 (3.1) |
| 5 |
23440 (3.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths