NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
936.5 |
| Mean read quality |
10.7 |
| Median read length |
499.5 |
| Median read quality |
13.7 |
| Number of reads |
23,740.0 |
| Read length N50 |
1,666.0 |
| STDEV read length |
3,243.4 |
| Total bases |
22,232,987.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q10 |
18426 (77.6%) 17.7Mb |
| >Q15 |
8914 (37.5%) 9.9Mb |
| >Q20 |
1250 (5.3%) 1.1Mb |
| >Q25 |
100 (0.4%) 0.0Mb |
| >Q30 |
12 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
37.7 (341) |
| 2 |
36.8 (120) |
| 3 |
35.0 (209) |
| 4 |
34.9 (626) |
| 5 |
33.4 (209) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
259959 (5.9) |
| 2 |
206880 (8.1) |
| 3 |
188279 (3.3) |
| 4 |
126582 (6.6) |
| 5 |
104578 (6.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths