NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
989.3 |
| Mean read quality |
6.5 |
| Median read length |
193.0 |
| Median read quality |
4.0 |
| Number of reads |
33,862.0 |
| Read length N50 |
7,018.0 |
| STDEV read length |
6,847.5 |
| Total bases |
33,500,953.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
12641 (37.3%) 11.4Mb |
| >Q7 |
8680 (25.6%) 8.2Mb |
| >Q10 |
6442 (19.0%) 6.4Mb |
| >Q12 |
5578 (16.5%) 5.8Mb |
| >Q15 |
4092 (12.1%) 4.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
37.4 (137) |
| 2 |
36.5 (267) |
| 3 |
35.5 (236) |
| 4 |
35.3 (137) |
| 5 |
35.3 (678) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
535184 (2.6) |
| 2 |
402441 (4.8) |
| 3 |
352817 (3.4) |
| 4 |
306759 (5.3) |
| 5 |
292216 (3.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths