NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
996.2 |
| Mean read quality |
13.4 |
| Median read length |
433.0 |
| Median read quality |
13.9 |
| Number of reads |
106,755.0 |
| Read length N50 |
1,794.0 |
| STDEV read length |
8,992.9 |
| Total bases |
106,345,052.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
98834 (92.6%) 73.0Mb |
| >Q7 |
92160 (86.3%) 61.8Mb |
| >Q10 |
78932 (73.9%) 52.0Mb |
| >Q12 |
67492 (63.2%) 45.3Mb |
| >Q15 |
44176 (41.4%) 30.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
37.5 (969) |
| 2 |
37.1 (342) |
| 3 |
37.1 (326) |
| 4 |
36.4 (182) |
| 5 |
36.3 (135) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
840211 (6.1) |
| 2 |
706601 (5.4) |
| 3 |
656279 (5.3) |
| 4 |
607010 (2.5) |
| 5 |
571760 (4.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths