NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
576.3 |
| Mean read quality |
7.9 |
| Median read length |
165.0 |
| Median read quality |
10.9 |
| Number of reads |
65,377.0 |
| Read length N50 |
15,914.0 |
| STDEV read length |
8,137.0 |
| Total bases |
37,678,013.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q10 |
35630 (54.5%) 6.8Mb |
| >Q15 |
18574 (28.4%) 3.8Mb |
| >Q20 |
6034 (9.2%) 1.3Mb |
| >Q25 |
1522 (2.3%) 0.3Mb |
| >Q30 |
313 (0.5%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
43.5 (317) |
| 2 |
40.4 (110) |
| 3 |
40.4 (176) |
| 4 |
39.7 (146) |
| 5 |
39.2 (148) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
728009 (5.9) |
| 2 |
598559 (4.3) |
| 3 |
550665 (4.1) |
| 4 |
531690 (2.3) |
| 5 |
526907 (5.4) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
576.3 |
| Mean read quality |
7.9 |
| Median read length |
165.0 |
| Median read quality |
10.9 |
| Number of reads |
65,376.0 |
| Read length N50 |
15,914.0 |
| STDEV read length |
8,137.0 |
| Total bases |
37,677,999.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q10 |
35629 (54.5%) 6.8Mb |
| >Q15 |
18573 (28.4%) 3.8Mb |
| >Q20 |
6033 (9.2%) 1.3Mb |
| >Q25 |
1521 (2.3%) 0.3Mb |
| >Q30 |
312 (0.5%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
43.5 (317) |
| 2 |
40.4 (110) |
| 3 |
40.4 (176) |
| 4 |
39.7 (146) |
| 5 |
39.2 (148) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
728009 (5.9) |
| 2 |
598559 (4.3) |
| 3 |
550665 (4.1) |
| 4 |
531690 (2.3) |
| 5 |
526907 (5.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths