NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
905.7 |
| Mean read quality |
11.8 |
| Median read length |
426.0 |
| Median read quality |
12.8 |
| Number of reads |
554,925.0 |
| Read length N50 |
1,638.0 |
| STDEV read length |
5,848.4 |
| Total bases |
502,590,576.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
448855 (80.9%) 353.9Mb |
| >Q7 |
398138 (71.7%) 312.3Mb |
| >Q10 |
338481 (61.0%) 280.7Mb |
| >Q12 |
299132 (53.9%) 254.1Mb |
| >Q15 |
203741 (36.7%) 180.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.4 (328) |
| 2 |
39.2 (323) |
| 3 |
38.3 (199) |
| 4 |
38.0 (423) |
| 5 |
37.8 (129) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
734424 (2.0) |
| 2 |
731030 (3.9) |
| 3 |
724386 (1.7) |
| 4 |
711217 (2.4) |
| 5 |
707063 (6.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths