NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
905.7 |
Mean read quality |
11.8 |
Median read length |
426.0 |
Median read quality |
12.8 |
Number of reads |
554,925.0 |
Read length N50 |
1,638.0 |
STDEV read length |
5,848.4 |
Total bases |
502,590,576.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
448855 (80.9%) 353.9Mb |
>Q7 |
398138 (71.7%) 312.3Mb |
>Q10 |
338481 (61.0%) 280.7Mb |
>Q12 |
299132 (53.9%) 254.1Mb |
>Q15 |
203741 (36.7%) 180.8Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
39.4 (328) |
2 |
39.2 (323) |
3 |
38.3 (199) |
4 |
38.0 (423) |
5 |
37.8 (129) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
734424 (2.0) |
2 |
731030 (3.9) |
3 |
724386 (1.7) |
4 |
711217 (2.4) |
5 |
707063 (6.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths