NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 905.7
Mean read quality 11.8
Median read length 426.0
Median read quality 12.8
Number of reads 554,925.0
Read length N50 1,638.0
STDEV read length 5,848.4
Total bases 502,590,576.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 448855 (80.9%) 353.9Mb
>Q7 398138 (71.7%) 312.3Mb
>Q10 338481 (61.0%) 280.7Mb
>Q12 299132 (53.9%) 254.1Mb
>Q15 203741 (36.7%) 180.8Mb
Top 5 highest mean basecall quality scores and their read lengths
1 39.4 (328)
2 39.2 (323)
3 38.3 (199)
4 38.0 (423)
5 37.8 (129)
Top 5 longest reads and their mean basecall quality score
1 734424 (2.0)
2 731030 (3.9)
3 724386 (1.7)
4 711217 (2.4)
5 707063 (6.7)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length