NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
General summary |
|
Mean read length |
1,362.3 |
Mean read quality |
11.5 |
Median read length |
559.0 |
Median read quality |
12.3 |
Number of reads |
301,346.0 |
Read length N50 |
3,075.0 |
STDEV read length |
6,140.1 |
Total bases |
410,529,960.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
244878 (81.3%) 346.3Mb |
>Q7 |
213604 (70.9%) 322.5Mb |
>Q10 |
179908 (59.7%) 292.2Mb |
>Q12 |
155519 (51.6%) 262.0Mb |
>Q15 |
101031 (33.5%) 183.5Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
36.1 (141) |
2 |
35.9 (603) |
3 |
35.9 (108) |
4 |
35.3 (157) |
5 |
35.1 (155) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
923279 (4.6) |
2 |
899654 (2.2) |
3 |
882992 (2.7) |
4 |
628307 (2.5) |
5 |
589475 (4.2) |
Summary statistics after filtering
General summary |
|
Mean read length |
1,362.3 |
Mean read quality |
11.5 |
Median read length |
559.0 |
Median read quality |
12.3 |
Number of reads |
301,345.0 |
Read length N50 |
3,075.0 |
STDEV read length |
6,140.1 |
Total bases |
410,529,950.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
244877 (81.3%) 346.3Mb |
>Q7 |
213603 (70.9%) 322.5Mb |
>Q10 |
179907 (59.7%) 292.2Mb |
>Q12 |
155518 (51.6%) 262.0Mb |
>Q15 |
101030 (33.5%) 183.5Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
36.1 (141) |
2 |
35.9 (603) |
3 |
35.9 (108) |
4 |
35.3 (157) |
5 |
35.1 (155) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
923279 (4.6) |
2 |
899654 (2.2) |
3 |
882992 (2.7) |
4 |
628307 (2.5) |
5 |
589475 (4.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths