NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,471.4 |
| Mean read quality |
15.7 |
| Median read length |
596.0 |
| Median read quality |
17.3 |
| Number of reads |
440,780.0 |
| Read length N50 |
7,966.0 |
| STDEV read length |
15,074.2 |
| Total bases |
1,089,362,836.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
383594 (87.0%) 870.8Mb |
| >Q7 |
358200 (81.3%) 797.9Mb |
| >Q10 |
325103 (73.8%) 754.3Mb |
| >Q12 |
305082 (69.2%) 728.1Mb |
| >Q15 |
264880 (60.1%) 673.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
45.2 (582) |
| 2 |
44.5 (630) |
| 3 |
44.2 (86) |
| 4 |
43.6 (471) |
| 5 |
43.5 (312) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1682960 (5.8) |
| 2 |
1555415 (5.0) |
| 3 |
1452464 (5.1) |
| 4 |
1397288 (5.4) |
| 5 |
1313439 (4.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths