NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,471.4 |
Mean read quality |
15.7 |
Median read length |
596.0 |
Median read quality |
17.3 |
Number of reads |
440,780.0 |
Read length N50 |
7,966.0 |
STDEV read length |
15,074.2 |
Total bases |
1,089,362,836.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
383594 (87.0%) 870.8Mb |
>Q7 |
358200 (81.3%) 797.9Mb |
>Q10 |
325103 (73.8%) 754.3Mb |
>Q12 |
305082 (69.2%) 728.1Mb |
>Q15 |
264880 (60.1%) 673.1Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
45.2 (582) |
2 |
44.5 (630) |
3 |
44.2 (86) |
4 |
43.6 (471) |
5 |
43.5 (312) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
1682960 (5.8) |
2 |
1555415 (5.0) |
3 |
1452464 (5.1) |
4 |
1397288 (5.4) |
5 |
1313439 (4.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths