NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,234.9 |
| Mean read quality |
3.9 |
| Median read length |
133.0 |
| Median read quality |
3.4 |
| Number of reads |
168,624.0 |
| Read length N50 |
58,658.0 |
| STDEV read length |
12,529.5 |
| Total bases |
208,234,371.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
46185 (27.4%) 41.3Mb |
| >Q7 |
15749 (9.3%) 12.2Mb |
| >Q10 |
589 (0.3%) 1.6Mb |
| >Q12 |
226 (0.1%) 0.8Mb |
| >Q15 |
96 (0.1%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.9 (163) |
| 2 |
29.6 (113) |
| 3 |
25.9 (100) |
| 4 |
23.0 (464) |
| 5 |
22.0 (1998) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1199443 (2.4) |
| 2 |
1161686 (2.5) |
| 3 |
1144760 (2.6) |
| 4 |
1144621 (4.3) |
| 5 |
668518 (3.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths