NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 2,471.4
Mean read quality 15.7
Median read length 596.0
Median read quality 17.3
Number of reads 440,780.0
Read length N50 7,966.0
STDEV read length 15,074.2
Total bases 1,089,362,836.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 383594 (87.0%) 870.8Mb
>Q7 358200 (81.3%) 797.9Mb
>Q10 325103 (73.8%) 754.3Mb
>Q12 305082 (69.2%) 728.1Mb
>Q15 264880 (60.1%) 673.1Mb
Top 5 highest mean basecall quality scores and their read lengths
1 45.2 (582)
2 44.5 (630)
3 44.2 (86)
4 43.6 (471)
5 43.5 (312)
Top 5 longest reads and their mean basecall quality score
1 1682960 (5.8)
2 1555415 (5.0)
3 1452464 (5.1)
4 1397288 (5.4)
5 1313439 (4.7)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length