NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,590.6 |
| Mean read quality |
5.1 |
| Median read length |
117.0 |
| Median read quality |
4.3 |
| Number of reads |
584,626.0 |
| Read length N50 |
148,692.0 |
| STDEV read length |
20,105.5 |
| Total bases |
929,916,767.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
225178 (38.5%) 295.5Mb |
| >Q7 |
110336 (18.9%) 61.1Mb |
| >Q10 |
31410 (5.4%) 15.2Mb |
| >Q12 |
12977 (2.2%) 6.9Mb |
| >Q15 |
4352 (0.7%) 2.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
35.6 (40) |
| 2 |
35.4 (40) |
| 3 |
34.3 (41) |
| 4 |
34.0 (45) |
| 5 |
33.6 (27) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1876476 (6.2) |
| 2 |
1697386 (5.0) |
| 3 |
1560124 (6.1) |
| 4 |
1558601 (6.6) |
| 5 |
1509436 (6.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,590.6 |
| Mean read quality |
5.1 |
| Median read length |
117.0 |
| Median read quality |
4.3 |
| Number of reads |
584,625.0 |
| Read length N50 |
148,692.0 |
| STDEV read length |
20,105.5 |
| Total bases |
929,916,750.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
225177 (38.5%) 295.5Mb |
| >Q7 |
110335 (18.9%) 61.1Mb |
| >Q10 |
31409 (5.4%) 15.2Mb |
| >Q12 |
12976 (2.2%) 6.9Mb |
| >Q15 |
4351 (0.7%) 2.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
35.6 (40) |
| 2 |
35.4 (40) |
| 3 |
34.3 (41) |
| 4 |
34.0 (45) |
| 5 |
33.6 (27) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1876476 (6.2) |
| 2 |
1697386 (5.0) |
| 3 |
1560124 (6.1) |
| 4 |
1558601 (6.6) |
| 5 |
1509436 (6.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths