NanoPlot statistics report

NanoPlot reports

Summary statistics prior to filtering

General summary
Mean read length 1,590.6
Mean read quality 5.1
Median read length 117.0
Median read quality 4.3
Number of reads 584,626.0
Read length N50 148,692.0
STDEV read length 20,105.5
Total bases 929,916,767.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 225178 (38.5%) 295.5Mb
>Q7 110336 (18.9%) 61.1Mb
>Q10 31410 (5.4%) 15.2Mb
>Q12 12977 (2.2%) 6.9Mb
>Q15 4352 (0.7%) 2.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1 35.6 (40)
2 35.4 (40)
3 34.3 (41)
4 34.0 (45)
5 33.6 (27)
Top 5 longest reads and their mean basecall quality score
1 1876476 (6.2)
2 1697386 (5.0)
3 1560124 (6.1)
4 1558601 (6.6)
5 1509436 (6.2)

Summary statistics after filtering

General summary
Mean read length 1,590.6
Mean read quality 5.1
Median read length 117.0
Median read quality 4.3
Number of reads 584,625.0
Read length N50 148,692.0
STDEV read length 20,105.5
Total bases 929,916,750.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 225177 (38.5%) 295.5Mb
>Q7 110335 (18.9%) 61.1Mb
>Q10 31409 (5.4%) 15.2Mb
>Q12 12976 (2.2%) 6.9Mb
>Q15 4351 (0.7%) 2.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1 35.6 (40)
2 35.4 (40)
3 34.3 (41)
4 34.0 (45)
5 33.6 (27)
Top 5 longest reads and their mean basecall quality score
1 1876476 (6.2)
2 1697386 (5.0)
3 1560124 (6.1)
4 1558601 (6.6)
5 1509436 (6.2)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length