NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
General summary |
|
Mean read length |
1,590.6 |
Mean read quality |
5.1 |
Median read length |
117.0 |
Median read quality |
4.3 |
Number of reads |
584,626.0 |
Read length N50 |
148,692.0 |
STDEV read length |
20,105.5 |
Total bases |
929,916,767.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
225178 (38.5%) 295.5Mb |
>Q7 |
110336 (18.9%) 61.1Mb |
>Q10 |
31410 (5.4%) 15.2Mb |
>Q12 |
12977 (2.2%) 6.9Mb |
>Q15 |
4352 (0.7%) 2.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
35.6 (40) |
2 |
35.4 (40) |
3 |
34.3 (41) |
4 |
34.0 (45) |
5 |
33.6 (27) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
1876476 (6.2) |
2 |
1697386 (5.0) |
3 |
1560124 (6.1) |
4 |
1558601 (6.6) |
5 |
1509436 (6.2) |
Summary statistics after filtering
General summary |
|
Mean read length |
1,590.6 |
Mean read quality |
5.1 |
Median read length |
117.0 |
Median read quality |
4.3 |
Number of reads |
584,625.0 |
Read length N50 |
148,692.0 |
STDEV read length |
20,105.5 |
Total bases |
929,916,750.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
225177 (38.5%) 295.5Mb |
>Q7 |
110335 (18.9%) 61.1Mb |
>Q10 |
31409 (5.4%) 15.2Mb |
>Q12 |
12976 (2.2%) 6.9Mb |
>Q15 |
4351 (0.7%) 2.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
35.6 (40) |
2 |
35.4 (40) |
3 |
34.3 (41) |
4 |
34.0 (45) |
5 |
33.6 (27) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
1876476 (6.2) |
2 |
1697386 (5.0) |
3 |
1560124 (6.1) |
4 |
1558601 (6.6) |
5 |
1509436 (6.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths