NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,339.8 |
| Mean read quality |
16.9 |
| Median read length |
998.0 |
| Median read quality |
18.9 |
| Number of reads |
140,945.0 |
| Read length N50 |
5,369.0 |
| STDEV read length |
10,784.1 |
| Total bases |
329,781,587.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
123617 (87.7%) 274.4Mb |
| >Q7 |
118398 (84.0%) 253.5Mb |
| >Q10 |
111801 (79.3%) 247.7Mb |
| >Q12 |
107737 (76.4%) 242.2Mb |
| >Q15 |
97545 (69.2%) 227.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.7 (424) |
| 2 |
42.6 (142) |
| 3 |
42.1 (486) |
| 4 |
41.8 (1511) |
| 5 |
41.6 (882) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1178278 (3.4) |
| 2 |
1115716 (4.2) |
| 3 |
753431 (6.8) |
| 4 |
685909 (5.0) |
| 5 |
658310 (5.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths