NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 901.3
Mean read quality 10.3
Median read length 205.0
Median read quality 9.9
Number of reads 159,251.0
Read length N50 4,871.0
STDEV read length 8,457.4
Total bases 143,540,160.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 140161 (88.0%) 110.4Mb
>Q7 119610 (75.1%) 101.4Mb
>Q10 77906 (48.9%) 92.0Mb
>Q12 52877 (33.2%) 84.2Mb
>Q15 25732 (16.2%) 68.7Mb
Top 5 highest mean basecall quality scores and their read lengths
1 31.1 (224)
2 29.8 (111)
3 27.9 (269)
4 27.3 (802)
5 27.1 (932)
Top 5 longest reads and their mean basecall quality score
1 1329454 (6.6)
2 1008325 (5.0)
3 791496 (5.9)
4 751685 (4.7)
5 636690 (3.9)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length