NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
901.3 |
| Mean read quality |
10.3 |
| Median read length |
205.0 |
| Median read quality |
9.9 |
| Number of reads |
159,251.0 |
| Read length N50 |
4,871.0 |
| STDEV read length |
8,457.4 |
| Total bases |
143,540,160.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
140161 (88.0%) 110.4Mb |
| >Q7 |
119610 (75.1%) 101.4Mb |
| >Q10 |
77906 (48.9%) 92.0Mb |
| >Q12 |
52877 (33.2%) 84.2Mb |
| >Q15 |
25732 (16.2%) 68.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.1 (224) |
| 2 |
29.8 (111) |
| 3 |
27.9 (269) |
| 4 |
27.3 (802) |
| 5 |
27.1 (932) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1329454 (6.6) |
| 2 |
1008325 (5.0) |
| 3 |
791496 (5.9) |
| 4 |
751685 (4.7) |
| 5 |
636690 (3.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths