NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
1,043.2 |
Mean read quality |
4.6 |
Median read length |
455.0 |
Median read quality |
3.0 |
Number of reads |
129,465.0 |
Read length N50 |
1,858.0 |
STDEV read length |
5,457.4 |
Total bases |
135,057,881.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
20941 (16.2%) 19.3Mb |
>Q7 |
16663 (12.9%) 12.8Mb |
>Q10 |
13918 (10.8%) 11.1Mb |
>Q12 |
11817 (9.1%) 9.8Mb |
>Q15 |
8006 (6.2%) 7.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
35.9 (428) |
2 |
35.4 (120) |
3 |
35.4 (495) |
4 |
34.7 (527) |
5 |
34.7 (276) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
1252715 (4.7) |
2 |
667041 (3.8) |
3 |
619403 (4.3) |
4 |
323375 (2.8) |
5 |
310353 (5.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths