NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 1,007.4
Mean read quality 13.3
Median read length 501.0
Median read quality 14.5
Number of reads 129,408.0
Read length N50 1,733.0
STDEV read length 6,101.3
Total bases 130,361,761.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 104599 (80.8%) 82.1Mb
>Q7 98774 (76.3%) 75.2Mb
>Q10 88755 (68.6%) 69.0Mb
>Q12 80253 (62.0%) 64.5Mb
>Q15 60741 (46.9%) 52.1Mb
Top 5 highest mean basecall quality scores and their read lengths
1 41.6 (1600)
2 40.4 (231)
3 40.0 (388)
4 39.8 (312)
5 39.4 (288)
Top 5 longest reads and their mean basecall quality score
1 1088761 (5.0)
2 693102 (2.6)
3 570257 (4.1)
4 534194 (4.1)
5 412520 (3.5)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length