NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
1,007.4 |
Mean read quality |
13.3 |
Median read length |
501.0 |
Median read quality |
14.5 |
Number of reads |
129,408.0 |
Read length N50 |
1,733.0 |
STDEV read length |
6,101.3 |
Total bases |
130,361,761.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
104599 (80.8%) 82.1Mb |
>Q7 |
98774 (76.3%) 75.2Mb |
>Q10 |
88755 (68.6%) 69.0Mb |
>Q12 |
80253 (62.0%) 64.5Mb |
>Q15 |
60741 (46.9%) 52.1Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
41.6 (1600) |
2 |
40.4 (231) |
3 |
40.0 (388) |
4 |
39.8 (312) |
5 |
39.4 (288) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
1088761 (5.0) |
2 |
693102 (2.6) |
3 |
570257 (4.1) |
4 |
534194 (4.1) |
5 |
412520 (3.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths