NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,853.4 |
| Mean read quality |
8.3 |
| Median read length |
509.0 |
| Median read quality |
15.2 |
| Number of reads |
90,869.0 |
| Read length N50 |
13,082.0 |
| STDEV read length |
16,122.1 |
| Total bases |
168,415,479.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q10 |
58689 (64.6%) 67.8Mb |
| >Q15 |
46148 (50.8%) 57.5Mb |
| >Q20 |
19660 (21.6%) 25.4Mb |
| >Q25 |
3481 (3.8%) 2.9Mb |
| >Q30 |
513 (0.6%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.2 (200) |
| 2 |
40.7 (235) |
| 3 |
38.7 (182) |
| 4 |
38.4 (339) |
| 5 |
38.4 (871) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1360779 (6.4) |
| 2 |
1155286 (5.7) |
| 3 |
967557 (3.9) |
| 4 |
877708 (3.7) |
| 5 |
820074 (5.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths