NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
559.7 |
| Mean read quality |
13.6 |
| Median read length |
335.0 |
| Median read quality |
13.8 |
| Number of reads |
518,039.0 |
| Read length N50 |
826.0 |
| STDEV read length |
3,294.5 |
| Total bases |
289,927,776.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
490544 (94.7%) 253.0Mb |
| >Q7 |
459106 (88.6%) 233.2Mb |
| >Q10 |
386429 (74.6%) 205.2Mb |
| >Q12 |
324675 (62.7%) 180.6Mb |
| >Q15 |
212987 (41.1%) 128.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
43.0 (195) |
| 2 |
41.5 (97) |
| 3 |
41.1 (90) |
| 4 |
41.0 (184) |
| 5 |
40.6 (209) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
729766 (4.0) |
| 2 |
665935 (5.2) |
| 3 |
454353 (5.3) |
| 4 |
438672 (3.9) |
| 5 |
406561 (6.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths