NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,731.1 |
| Mean read quality |
17.9 |
| Median read length |
1,001.0 |
| Median read quality |
18.6 |
| Number of reads |
485,899.0 |
| Read length N50 |
2,991.0 |
| STDEV read length |
4,890.0 |
| Total bases |
841,138,166.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
476653 (98.1%) 810.5Mb |
| >Q7 |
466982 (96.1%) 790.7Mb |
| >Q10 |
442250 (91.0%) 755.8Mb |
| >Q12 |
419686 (86.4%) 726.5Mb |
| >Q15 |
363609 (74.8%) 652.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
43.3 (406) |
| 2 |
42.7 (271) |
| 3 |
41.8 (472) |
| 4 |
41.8 (415) |
| 5 |
41.7 (925) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1038061 (4.0) |
| 2 |
977832 (6.6) |
| 3 |
905522 (5.0) |
| 4 |
864088 (4.6) |
| 5 |
760616 (3.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths