NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
677.3 |
| Mean read quality |
14.1 |
| Median read length |
303.0 |
| Median read quality |
14.6 |
| Number of reads |
148,739.0 |
| Read length N50 |
1,280.0 |
| STDEV read length |
7,556.1 |
| Total bases |
100,747,589.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
136820 (92.0%) 72.9Mb |
| >Q7 |
127799 (85.9%) 67.3Mb |
| >Q10 |
108851 (73.2%) 58.2Mb |
| >Q12 |
95907 (64.5%) 53.2Mb |
| >Q15 |
70208 (47.2%) 42.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.0 (107) |
| 2 |
40.3 (580) |
| 3 |
40.2 (308) |
| 4 |
40.2 (337) |
| 5 |
40.0 (165) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
990154 (4.8) |
| 2 |
949774 (3.1) |
| 3 |
902910 (3.0) |
| 4 |
801286 (3.1) |
| 5 |
728535 (2.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths