NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
677.3 |
Mean read quality |
14.1 |
Median read length |
303.0 |
Median read quality |
14.6 |
Number of reads |
148,739.0 |
Read length N50 |
1,280.0 |
STDEV read length |
7,556.1 |
Total bases |
100,747,589.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
136820 (92.0%) 72.9Mb |
>Q7 |
127799 (85.9%) 67.3Mb |
>Q10 |
108851 (73.2%) 58.2Mb |
>Q12 |
95907 (64.5%) 53.2Mb |
>Q15 |
70208 (47.2%) 42.7Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
42.0 (107) |
2 |
40.3 (580) |
3 |
40.2 (308) |
4 |
40.2 (337) |
5 |
40.0 (165) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
990154 (4.8) |
2 |
949774 (3.1) |
3 |
902910 (3.0) |
4 |
801286 (3.1) |
5 |
728535 (2.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths