NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 677.3
Mean read quality 14.1
Median read length 303.0
Median read quality 14.6
Number of reads 148,739.0
Read length N50 1,280.0
STDEV read length 7,556.1
Total bases 100,747,589.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 136820 (92.0%) 72.9Mb
>Q7 127799 (85.9%) 67.3Mb
>Q10 108851 (73.2%) 58.2Mb
>Q12 95907 (64.5%) 53.2Mb
>Q15 70208 (47.2%) 42.7Mb
Top 5 highest mean basecall quality scores and their read lengths
1 42.0 (107)
2 40.3 (580)
3 40.2 (308)
4 40.2 (337)
5 40.0 (165)
Top 5 longest reads and their mean basecall quality score
1 990154 (4.8)
2 949774 (3.1)
3 902910 (3.0)
4 801286 (3.1)
5 728535 (2.8)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length