NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
687.0 |
| Mean read quality |
11.9 |
| Median read length |
370.0 |
| Median read quality |
16.6 |
| Number of reads |
469,655.0 |
| Read length N50 |
1,102.0 |
| STDEV read length |
6,019.7 |
| Total bases |
322,659,260.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q10 |
390734 (83.2%) 233.8Mb |
| >Q15 |
287748 (61.3%) 187.3Mb |
| >Q20 |
115148 (24.5%) 77.4Mb |
| >Q25 |
24144 (5.1%) 11.7Mb |
| >Q30 |
4779 (1.0%) 1.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
45.0 (235) |
| 2 |
44.5 (133) |
| 3 |
44.3 (259) |
| 4 |
43.2 (233) |
| 5 |
43.0 (273) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1237267 (19.7) |
| 2 |
1193631 (3.0) |
| 3 |
1045389 (3.4) |
| 4 |
885712 (13.7) |
| 5 |
811646 (6.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths