NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,825.4 |
Mean read quality |
15.2 |
Median read length |
2,763.0 |
Median read quality |
15.8 |
Number of reads |
117,479.0 |
Read length N50 |
9,034.0 |
STDEV read length |
5,868.5 |
Total bases |
566,883,659.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
116765 (99.4%) 566.3Mb |
>Q7 |
115827 (98.6%) 564.3Mb |
>Q10 |
107675 (91.7%) 534.1Mb |
>Q12 |
98744 (84.1%) 510.0Mb |
>Q15 |
70667 (60.2%) 428.9Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
28.3 (2625) |
2 |
27.0 (8407) |
3 |
26.8 (14055) |
4 |
25.4 (21109) |
5 |
25.4 (6524) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
101793 (5.5) |
2 |
92194 (20.1) |
3 |
80203 (15.6) |
4 |
78340 (3.3) |
5 |
75974 (18.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths