NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 1,723.5
Mean read quality 13.8
Median read length 654.0
Median read quality 14.8
Number of reads 11,668.0
Read length N50 4,302.0
STDEV read length 2,790.2
Total bases 20,109,977.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 10851 (93.0%) 19.8Mb
>Q7 9933 (85.1%) 18.8Mb
>Q10 9138 (78.3%) 18.1Mb
>Q12 8239 (70.6%) 17.3Mb
>Q15 5552 (47.6%) 13.3Mb
Top 5 highest mean basecall quality scores and their read lengths
1 31.3 (181)
2 30.7 (439)
3 30.6 (157)
4 30.0 (700)
5 29.9 (474)
Top 5 longest reads and their mean basecall quality score
1 36887 (17.3)
2 32683 (11.9)
3 31041 (17.5)
4 30858 (17.0)
5 30300 (15.0)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length