NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,723.5 |
| Mean read quality |
13.8 |
| Median read length |
654.0 |
| Median read quality |
14.8 |
| Number of reads |
11,668.0 |
| Read length N50 |
4,302.0 |
| STDEV read length |
2,790.2 |
| Total bases |
20,109,977.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
10851 (93.0%) 19.8Mb |
| >Q7 |
9933 (85.1%) 18.8Mb |
| >Q10 |
9138 (78.3%) 18.1Mb |
| >Q12 |
8239 (70.6%) 17.3Mb |
| >Q15 |
5552 (47.6%) 13.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.3 (181) |
| 2 |
30.7 (439) |
| 3 |
30.6 (157) |
| 4 |
30.0 (700) |
| 5 |
29.9 (474) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36887 (17.3) |
| 2 |
32683 (11.9) |
| 3 |
31041 (17.5) |
| 4 |
30858 (17.0) |
| 5 |
30300 (15.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths