NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 2,939.9
Mean read quality 11.5
Median read length 1,197.0
Median read quality 12.4
Number of reads 347,904.0
Read length N50 7,052.0
STDEV read length 6,917.5
Total bases 1,022,814,204.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 296672 (85.3%) 910.6Mb
>Q7 268500 (77.2%) 864.3Mb
>Q10 229239 (65.9%) 784.0Mb
>Q12 184650 (53.1%) 663.3Mb
>Q15 95227 (27.4%) 365.1Mb
Top 5 highest mean basecall quality scores and their read lengths
1 36.9 (154)
2 36.9 (192)
3 36.0 (206)
4 35.5 (490)
5 35.2 (292)
Top 5 longest reads and their mean basecall quality score
1 971030 (1.9)
2 829744 (1.6)
3 752663 (3.2)
4 605820 (5.5)
5 576818 (1.8)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length