NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,939.9 |
Mean read quality |
11.5 |
Median read length |
1,197.0 |
Median read quality |
12.4 |
Number of reads |
347,904.0 |
Read length N50 |
7,052.0 |
STDEV read length |
6,917.5 |
Total bases |
1,022,814,204.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
296672 (85.3%) 910.6Mb |
>Q7 |
268500 (77.2%) 864.3Mb |
>Q10 |
229239 (65.9%) 784.0Mb |
>Q12 |
184650 (53.1%) 663.3Mb |
>Q15 |
95227 (27.4%) 365.1Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
36.9 (154) |
2 |
36.9 (192) |
3 |
36.0 (206) |
4 |
35.5 (490) |
5 |
35.2 (292) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
971030 (1.9) |
2 |
829744 (1.6) |
3 |
752663 (3.2) |
4 |
605820 (5.5) |
5 |
576818 (1.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths