NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Active channels 495.0
Mean read length 655.3
Mean read quality 10.4
Median read length 414.0
Median read quality 10.1
Number of reads 109,136.0
Read length N50 819.0
STDEV read length 869.0
Total bases 71,513,017.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 109136 (100.0%) 71.5Mb
>Q7 109136 (100.0%) 71.5Mb
>Q10 60867 (55.8%) 37.0Mb
>Q12 8718 (8.0%) 4.4Mb
>Q15 343 (0.3%) 0.2Mb
Top 5 highest mean basecall quality scores and their read lengths
1 40.3 (236)
2 39.6 (231)
3 39.4 (221)
4 38.6 (291)
5 31.7 (320)
Top 5 longest reads and their mean basecall quality score
1 27648 (9.9)
2 15204 (9.8)
3 15177 (10.7)
4 14025 (9.6)
5 13582 (9.4)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Number of reads generated per channel

Cumulative yield

Cumulative yield

Number of reads over time

Number of active pores over time

Violin plot of read lengths over time

Violin plot of quality over time