NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
General summary |
|
Mean read length |
476.3 |
Mean read quality |
15.7 |
Median read length |
421.0 |
Median read quality |
15.2 |
Number of reads |
1,626,149.0 |
Read length N50 |
501.0 |
STDEV read length |
340.9 |
Total bases |
774,466,195.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1624898 (99.9%) 773.9Mb |
>Q7 |
1622856 (99.8%) 773.0Mb |
>Q10 |
1601001 (98.5%) 764.6Mb |
>Q12 |
1432106 (88.1%) 690.8Mb |
>Q15 |
846481 (52.1%) 411.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
41.8 (429) |
2 |
41.2 (413) |
3 |
40.2 (70) |
4 |
40.2 (241) |
5 |
40.1 (202) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
196172 (6.6) |
2 |
159159 (8.3) |
3 |
100964 (3.9) |
4 |
41214 (1.4) |
5 |
39707 (4.5) |
Summary statistics after filtering
General summary |
|
Mean read length |
476.3 |
Mean read quality |
15.7 |
Median read length |
421.0 |
Median read quality |
15.2 |
Number of reads |
1,626,143.0 |
Read length N50 |
501.0 |
STDEV read length |
340.9 |
Total bases |
774,466,125.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1624892 (99.9%) 773.9Mb |
>Q7 |
1622850 (99.8%) 773.0Mb |
>Q10 |
1600995 (98.5%) 764.6Mb |
>Q12 |
1432100 (88.1%) 690.8Mb |
>Q15 |
846475 (52.1%) 411.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
41.8 (429) |
2 |
41.2 (413) |
3 |
40.2 (70) |
4 |
40.2 (241) |
5 |
40.1 (202) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
196172 (6.6) |
2 |
159159 (8.3) |
3 |
100964 (3.9) |
4 |
41214 (1.4) |
5 |
39707 (4.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths