NanoPlot statistics report

NanoPlot reports

Summary statistics prior to filtering

General summary
Mean read length 476.3
Mean read quality 15.7
Median read length 421.0
Median read quality 15.2
Number of reads 1,626,149.0
Read length N50 501.0
STDEV read length 340.9
Total bases 774,466,195.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 1624898 (99.9%) 773.9Mb
>Q7 1622856 (99.8%) 773.0Mb
>Q10 1601001 (98.5%) 764.6Mb
>Q12 1432106 (88.1%) 690.8Mb
>Q15 846481 (52.1%) 411.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1 41.8 (429)
2 41.2 (413)
3 40.2 (70)
4 40.2 (241)
5 40.1 (202)
Top 5 longest reads and their mean basecall quality score
1 196172 (6.6)
2 159159 (8.3)
3 100964 (3.9)
4 41214 (1.4)
5 39707 (4.5)

Summary statistics after filtering

General summary
Mean read length 476.3
Mean read quality 15.7
Median read length 421.0
Median read quality 15.2
Number of reads 1,626,143.0
Read length N50 501.0
STDEV read length 340.9
Total bases 774,466,125.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 1624892 (99.9%) 773.9Mb
>Q7 1622850 (99.8%) 773.0Mb
>Q10 1600995 (98.5%) 764.6Mb
>Q12 1432100 (88.1%) 690.8Mb
>Q15 846475 (52.1%) 411.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1 41.8 (429)
2 41.2 (413)
3 40.2 (70)
4 40.2 (241)
5 40.1 (202)
Top 5 longest reads and their mean basecall quality score
1 196172 (6.6)
2 159159 (8.3)
3 100964 (3.9)
4 41214 (1.4)
5 39707 (4.5)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length