NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
General summary |
|
Mean read length |
417.7 |
Mean read quality |
15.6 |
Median read length |
362.0 |
Median read quality |
15.1 |
Number of reads |
937,875.0 |
Read length N50 |
465.0 |
STDEV read length |
313.4 |
Total bases |
391,793,982.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
937273 (99.9%) 391.7Mb |
>Q7 |
936176 (99.8%) 391.3Mb |
>Q10 |
923504 (98.5%) 387.7Mb |
>Q12 |
825053 (88.0%) 351.4Mb |
>Q15 |
475708 (50.7%) 208.5Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
41.4 (413) |
2 |
41.2 (129) |
3 |
41.0 (241) |
4 |
40.8 (400) |
5 |
40.5 (302) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
167673 (6.2) |
2 |
18188 (2.6) |
3 |
14746 (4.2) |
4 |
8455 (3.5) |
5 |
6519 (16.9) |
Summary statistics after filtering
General summary |
|
Mean read length |
417.7 |
Mean read quality |
15.6 |
Median read length |
362.0 |
Median read quality |
15.1 |
Number of reads |
937,874.0 |
Read length N50 |
465.0 |
STDEV read length |
313.4 |
Total bases |
391,793,968.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
937272 (99.9%) 391.7Mb |
>Q7 |
936175 (99.8%) 391.3Mb |
>Q10 |
923503 (98.5%) 387.7Mb |
>Q12 |
825052 (88.0%) 351.4Mb |
>Q15 |
475707 (50.7%) 208.5Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
41.4 (413) |
2 |
41.2 (129) |
3 |
41.0 (241) |
4 |
40.8 (400) |
5 |
40.5 (302) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
167673 (6.2) |
2 |
18188 (2.6) |
3 |
14746 (4.2) |
4 |
8455 (3.5) |
5 |
6519 (16.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths