NanoPlot statistics report

NanoPlot reports

Summary statistics prior to filtering

General summary
Mean read length 417.7
Mean read quality 15.6
Median read length 362.0
Median read quality 15.1
Number of reads 937,875.0
Read length N50 465.0
STDEV read length 313.4
Total bases 391,793,982.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 937273 (99.9%) 391.7Mb
>Q7 936176 (99.8%) 391.3Mb
>Q10 923504 (98.5%) 387.7Mb
>Q12 825053 (88.0%) 351.4Mb
>Q15 475708 (50.7%) 208.5Mb
Top 5 highest mean basecall quality scores and their read lengths
1 41.4 (413)
2 41.2 (129)
3 41.0 (241)
4 40.8 (400)
5 40.5 (302)
Top 5 longest reads and their mean basecall quality score
1 167673 (6.2)
2 18188 (2.6)
3 14746 (4.2)
4 8455 (3.5)
5 6519 (16.9)

Summary statistics after filtering

General summary
Mean read length 417.7
Mean read quality 15.6
Median read length 362.0
Median read quality 15.1
Number of reads 937,874.0
Read length N50 465.0
STDEV read length 313.4
Total bases 391,793,968.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 937272 (99.9%) 391.7Mb
>Q7 936175 (99.8%) 391.3Mb
>Q10 923503 (98.5%) 387.7Mb
>Q12 825052 (88.0%) 351.4Mb
>Q15 475707 (50.7%) 208.5Mb
Top 5 highest mean basecall quality scores and their read lengths
1 41.4 (413)
2 41.2 (129)
3 41.0 (241)
4 40.8 (400)
5 40.5 (302)
Top 5 longest reads and their mean basecall quality score
1 167673 (6.2)
2 18188 (2.6)
3 14746 (4.2)
4 8455 (3.5)
5 6519 (16.9)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length