NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
238.4 |
| Mean read quality |
14.6 |
| Median read length |
203.0 |
| Median read quality |
14.2 |
| Number of reads |
125,019.0 |
| Read length N50 |
268.0 |
| STDEV read length |
338.8 |
| Total bases |
29,808,208.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
124524 (99.6%) 29.8Mb |
| >Q7 |
123676 (98.9%) 29.6Mb |
| >Q10 |
118126 (94.5%) 28.8Mb |
| >Q12 |
99660 (79.7%) 24.9Mb |
| >Q15 |
49697 (39.8%) 12.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
37.4 (286) |
| 2 |
37.4 (64) |
| 3 |
36.9 (245) |
| 4 |
36.5 (337) |
| 5 |
36.4 (67) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
85696 (8.4) |
| 2 |
60744 (5.6) |
| 3 |
16753 (5.0) |
| 4 |
10740 (4.1) |
| 5 |
7191 (14.0) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
238.4 |
| Mean read quality |
14.6 |
| Median read length |
203.0 |
| Median read quality |
14.2 |
| Number of reads |
125,016.0 |
| Read length N50 |
268.0 |
| STDEV read length |
338.8 |
| Total bases |
29,808,166.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
124521 (99.6%) 29.8Mb |
| >Q7 |
123673 (98.9%) 29.6Mb |
| >Q10 |
118123 (94.5%) 28.8Mb |
| >Q12 |
99657 (79.7%) 24.9Mb |
| >Q15 |
49694 (39.8%) 12.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
37.4 (286) |
| 2 |
37.4 (64) |
| 3 |
36.9 (245) |
| 4 |
36.5 (337) |
| 5 |
36.4 (67) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
85696 (8.4) |
| 2 |
60744 (5.6) |
| 3 |
16753 (5.0) |
| 4 |
10740 (4.1) |
| 5 |
7191 (14.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths