NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
General summary |
|
Mean read length |
238.4 |
Mean read quality |
14.6 |
Median read length |
203.0 |
Median read quality |
14.2 |
Number of reads |
125,019.0 |
Read length N50 |
268.0 |
STDEV read length |
338.8 |
Total bases |
29,808,208.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
124524 (99.6%) 29.8Mb |
>Q7 |
123676 (98.9%) 29.6Mb |
>Q10 |
118126 (94.5%) 28.8Mb |
>Q12 |
99660 (79.7%) 24.9Mb |
>Q15 |
49697 (39.8%) 12.4Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
37.4 (286) |
2 |
37.4 (64) |
3 |
36.9 (245) |
4 |
36.5 (337) |
5 |
36.4 (67) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
85696 (8.4) |
2 |
60744 (5.6) |
3 |
16753 (5.0) |
4 |
10740 (4.1) |
5 |
7191 (14.0) |
Summary statistics after filtering
General summary |
|
Mean read length |
238.4 |
Mean read quality |
14.6 |
Median read length |
203.0 |
Median read quality |
14.2 |
Number of reads |
125,016.0 |
Read length N50 |
268.0 |
STDEV read length |
338.8 |
Total bases |
29,808,166.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
124521 (99.6%) 29.8Mb |
>Q7 |
123673 (98.9%) 29.6Mb |
>Q10 |
118123 (94.5%) 28.8Mb |
>Q12 |
99657 (79.7%) 24.9Mb |
>Q15 |
49694 (39.8%) 12.4Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
37.4 (286) |
2 |
37.4 (64) |
3 |
36.9 (245) |
4 |
36.5 (337) |
5 |
36.4 (67) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
85696 (8.4) |
2 |
60744 (5.6) |
3 |
16753 (5.0) |
4 |
10740 (4.1) |
5 |
7191 (14.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths