NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
General summary |
|
Mean read length |
307.6 |
Mean read quality |
14.9 |
Median read length |
247.0 |
Median read quality |
14.5 |
Number of reads |
615,289.0 |
Read length N50 |
363.0 |
STDEV read length |
307.4 |
Total bases |
189,249,161.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
614435 (99.9%) 189.1Mb |
>Q7 |
612932 (99.6%) 188.8Mb |
>Q10 |
597052 (97.0%) 186.2Mb |
>Q12 |
518717 (84.3%) 166.3Mb |
>Q15 |
267491 (43.5%) 87.6Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
40.1 (69) |
2 |
38.8 (120) |
3 |
38.2 (64) |
4 |
37.8 (128) |
5 |
37.5 (82) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
110721 (5.2) |
2 |
91286 (7.1) |
3 |
49544 (5.7) |
4 |
42393 (4.6) |
5 |
42080 (7.3) |
Summary statistics after filtering
General summary |
|
Mean read length |
307.6 |
Mean read quality |
14.9 |
Median read length |
248.0 |
Median read quality |
14.5 |
Number of reads |
615,285.0 |
Read length N50 |
363.0 |
STDEV read length |
307.4 |
Total bases |
189,249,113.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
614431 (99.9%) 189.1Mb |
>Q7 |
612928 (99.6%) 188.8Mb |
>Q10 |
597048 (97.0%) 186.2Mb |
>Q12 |
518713 (84.3%) 166.3Mb |
>Q15 |
267487 (43.5%) 87.6Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
40.1 (69) |
2 |
38.8 (120) |
3 |
38.2 (64) |
4 |
37.8 (128) |
5 |
37.5 (82) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
110721 (5.2) |
2 |
91286 (7.1) |
3 |
49544 (5.7) |
4 |
42393 (4.6) |
5 |
42080 (7.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths