NanoPlot statistics report

NanoPlot reports

Summary statistics prior to filtering

General summary
Mean read length 307.6
Mean read quality 14.9
Median read length 247.0
Median read quality 14.5
Number of reads 615,289.0
Read length N50 363.0
STDEV read length 307.4
Total bases 189,249,161.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 614435 (99.9%) 189.1Mb
>Q7 612932 (99.6%) 188.8Mb
>Q10 597052 (97.0%) 186.2Mb
>Q12 518717 (84.3%) 166.3Mb
>Q15 267491 (43.5%) 87.6Mb
Top 5 highest mean basecall quality scores and their read lengths
1 40.1 (69)
2 38.8 (120)
3 38.2 (64)
4 37.8 (128)
5 37.5 (82)
Top 5 longest reads and their mean basecall quality score
1 110721 (5.2)
2 91286 (7.1)
3 49544 (5.7)
4 42393 (4.6)
5 42080 (7.3)

Summary statistics after filtering

General summary
Mean read length 307.6
Mean read quality 14.9
Median read length 248.0
Median read quality 14.5
Number of reads 615,285.0
Read length N50 363.0
STDEV read length 307.4
Total bases 189,249,113.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 614431 (99.9%) 189.1Mb
>Q7 612928 (99.6%) 188.8Mb
>Q10 597048 (97.0%) 186.2Mb
>Q12 518713 (84.3%) 166.3Mb
>Q15 267487 (43.5%) 87.6Mb
Top 5 highest mean basecall quality scores and their read lengths
1 40.1 (69)
2 38.8 (120)
3 38.2 (64)
4 37.8 (128)
5 37.5 (82)
Top 5 longest reads and their mean basecall quality score
1 110721 (5.2)
2 91286 (7.1)
3 49544 (5.7)
4 42393 (4.6)
5 42080 (7.3)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length