NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
420.1 |
| Mean read quality |
15.6 |
| Median read length |
381.0 |
| Median read quality |
15.1 |
| Number of reads |
1,379,889.0 |
| Read length N50 |
439.0 |
| STDEV read length |
231.1 |
| Total bases |
579,724,008.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1378775 (99.9%) 579.5Mb |
| >Q7 |
1376762 (99.8%) 579.0Mb |
| >Q10 |
1355667 (98.2%) 572.2Mb |
| >Q12 |
1201873 (87.1%) 511.4Mb |
| >Q15 |
698665 (50.6%) 295.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.3 (149) |
| 2 |
40.1 (428) |
| 3 |
39.7 (228) |
| 4 |
39.7 (237) |
| 5 |
39.6 (141) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33766 (4.0) |
| 2 |
32763 (4.0) |
| 3 |
18518 (16.4) |
| 4 |
17345 (3.0) |
| 5 |
8439 (16.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
420.1 |
| Mean read quality |
15.6 |
| Median read length |
381.0 |
| Median read quality |
15.1 |
| Number of reads |
1,379,883.0 |
| Read length N50 |
439.0 |
| STDEV read length |
231.1 |
| Total bases |
579,723,944.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1378769 (99.9%) 579.5Mb |
| >Q7 |
1376756 (99.8%) 579.0Mb |
| >Q10 |
1355661 (98.2%) 572.2Mb |
| >Q12 |
1201867 (87.1%) 511.4Mb |
| >Q15 |
698659 (50.6%) 295.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.3 (149) |
| 2 |
40.1 (428) |
| 3 |
39.7 (228) |
| 4 |
39.7 (237) |
| 5 |
39.6 (141) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33766 (4.0) |
| 2 |
32763 (4.0) |
| 3 |
18518 (16.4) |
| 4 |
17345 (3.0) |
| 5 |
8439 (16.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths