NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
537.9 |
| Mean read quality |
15.8 |
| Median read length |
438.0 |
| Median read quality |
15.4 |
| Number of reads |
1,221,711.0 |
| Read length N50 |
638.0 |
| STDEV read length |
373.4 |
| Total bases |
657,204,933.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1220882 (99.9%) 657.0Mb |
| >Q7 |
1219492 (99.8%) 656.6Mb |
| >Q10 |
1206736 (98.8%) 652.1Mb |
| >Q12 |
1099606 (90.0%) 604.5Mb |
| >Q15 |
667565 (54.6%) 386.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.1 (264) |
| 2 |
40.2 (564) |
| 3 |
39.8 (65) |
| 4 |
39.6 (184) |
| 5 |
38.8 (435) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33080 (6.0) |
| 2 |
31371 (2.6) |
| 3 |
16999 (2.8) |
| 4 |
12807 (3.0) |
| 5 |
12315 (19.1) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
537.9 |
| Mean read quality |
15.8 |
| Median read length |
438.0 |
| Median read quality |
15.4 |
| Number of reads |
1,221,706.0 |
| Read length N50 |
638.0 |
| STDEV read length |
373.4 |
| Total bases |
657,204,898.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1220877 (99.9%) 657.0Mb |
| >Q7 |
1219487 (99.8%) 656.6Mb |
| >Q10 |
1206731 (98.8%) 652.1Mb |
| >Q12 |
1099601 (90.0%) 604.5Mb |
| >Q15 |
667560 (54.6%) 386.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.1 (264) |
| 2 |
40.2 (564) |
| 3 |
39.8 (65) |
| 4 |
39.6 (184) |
| 5 |
38.8 (435) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33080 (6.0) |
| 2 |
31371 (2.6) |
| 3 |
16999 (2.8) |
| 4 |
12807 (3.0) |
| 5 |
12315 (19.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths