NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
General summary |
|
Mean read length |
470.9 |
Mean read quality |
15.6 |
Median read length |
405.0 |
Median read quality |
15.2 |
Number of reads |
1,338,218.0 |
Read length N50 |
517.0 |
STDEV read length |
313.8 |
Total bases |
630,205,582.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1336889 (99.9%) 629.9Mb |
>Q7 |
1334714 (99.7%) 629.4Mb |
>Q10 |
1316065 (98.3%) 623.2Mb |
>Q12 |
1178069 (88.0%) 566.6Mb |
>Q15 |
701862 (52.4%) 348.7Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
43.9 (165) |
2 |
41.6 (404) |
3 |
40.5 (192) |
4 |
40.4 (151) |
5 |
40.3 (444) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
103500 (4.5) |
2 |
76797 (3.3) |
3 |
33669 (9.1) |
4 |
16947 (5.2) |
5 |
16652 (8.1) |
Summary statistics after filtering
General summary |
|
Mean read length |
470.9 |
Mean read quality |
15.6 |
Median read length |
405.0 |
Median read quality |
15.2 |
Number of reads |
1,338,214.0 |
Read length N50 |
517.0 |
STDEV read length |
313.8 |
Total bases |
630,205,538.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1336885 (99.9%) 629.9Mb |
>Q7 |
1334710 (99.7%) 629.4Mb |
>Q10 |
1316061 (98.3%) 623.2Mb |
>Q12 |
1178065 (88.0%) 566.6Mb |
>Q15 |
701858 (52.4%) 348.7Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
43.9 (165) |
2 |
41.6 (404) |
3 |
40.5 (192) |
4 |
40.4 (151) |
5 |
40.3 (444) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
103500 (4.5) |
2 |
76797 (3.3) |
3 |
33669 (9.1) |
4 |
16947 (5.2) |
5 |
16652 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths