NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
441.6 |
| Mean read quality |
15.4 |
| Median read length |
392.0 |
| Median read quality |
14.9 |
| Number of reads |
1,116,385.0 |
| Read length N50 |
474.0 |
| STDEV read length |
311.1 |
| Total bases |
492,962,811.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1115612 (99.9%) 492.6Mb |
| >Q7 |
1114363 (99.8%) 492.1Mb |
| >Q10 |
1098620 (98.4%) 487.3Mb |
| >Q12 |
976202 (87.4%) 439.5Mb |
| >Q15 |
547983 (49.1%) 252.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.9 (187) |
| 2 |
40.8 (284) |
| 3 |
40.5 (69) |
| 4 |
39.7 (28) |
| 5 |
39.6 (107) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
128999 (7.0) |
| 2 |
95187 (4.3) |
| 3 |
56145 (5.1) |
| 4 |
37212 (4.9) |
| 5 |
34931 (6.9) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
441.6 |
| Mean read quality |
15.4 |
| Median read length |
392.0 |
| Median read quality |
14.9 |
| Number of reads |
1,116,382.0 |
| Read length N50 |
474.0 |
| STDEV read length |
311.1 |
| Total bases |
492,962,776.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1115609 (99.9%) 492.6Mb |
| >Q7 |
1114360 (99.8%) 492.1Mb |
| >Q10 |
1098617 (98.4%) 487.3Mb |
| >Q12 |
976199 (87.4%) 439.5Mb |
| >Q15 |
547980 (49.1%) 252.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.9 (187) |
| 2 |
40.8 (284) |
| 3 |
40.5 (69) |
| 4 |
39.7 (28) |
| 5 |
39.6 (107) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
128999 (7.0) |
| 2 |
95187 (4.3) |
| 3 |
56145 (5.1) |
| 4 |
37212 (4.9) |
| 5 |
34931 (6.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths