NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
452.2 |
| Mean read quality |
15.4 |
| Median read length |
346.0 |
| Median read quality |
15.0 |
| Number of reads |
230,865.0 |
| Read length N50 |
571.0 |
| STDEV read length |
439.2 |
| Total bases |
104,398,663.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
230482 (99.8%) 104.3Mb |
| >Q7 |
229820 (99.5%) 104.2Mb |
| >Q10 |
226387 (98.1%) 103.6Mb |
| >Q12 |
206239 (89.3%) 96.6Mb |
| >Q15 |
116819 (50.6%) 56.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.7 (255) |
| 2 |
37.1 (228) |
| 3 |
37.0 (339) |
| 4 |
37.0 (95) |
| 5 |
36.9 (116) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
110024 (4.9) |
| 2 |
8673 (14.4) |
| 3 |
7946 (14.0) |
| 4 |
7662 (17.3) |
| 5 |
7346 (18.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
452.2 |
| Mean read quality |
15.4 |
| Median read length |
346.0 |
| Median read quality |
15.0 |
| Number of reads |
230,859.0 |
| Read length N50 |
571.0 |
| STDEV read length |
439.2 |
| Total bases |
104,398,595.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
230476 (99.8%) 104.3Mb |
| >Q7 |
229814 (99.5%) 104.2Mb |
| >Q10 |
226381 (98.1%) 103.6Mb |
| >Q12 |
206233 (89.3%) 96.6Mb |
| >Q15 |
116813 (50.6%) 56.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.7 (255) |
| 2 |
37.1 (228) |
| 3 |
37.0 (339) |
| 4 |
37.0 (95) |
| 5 |
36.9 (116) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
110024 (4.9) |
| 2 |
8673 (14.4) |
| 3 |
7946 (14.0) |
| 4 |
7662 (17.3) |
| 5 |
7346 (18.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths