NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Active channels 432.0
Mean read length 2,731.9
Mean read quality 10.3
Median read length 1,972.0
Median read quality 9.9
Number of reads 63,195.0
Read length N50 4,175.0
STDEV read length 2,507.4
Total bases 172,644,669.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 63195 (100.0%) 172.6Mb
>Q7 63195 (100.0%) 172.6Mb
>Q10 29982 (47.4%) 77.3Mb
>Q12 6360 (10.1%) 17.1Mb
>Q15 295 (0.5%) 0.7Mb
Top 5 highest mean basecall quality scores and their read lengths
1 90.0 (417)
2 37.4 (1006)
3 36.2 (524)
4 32.4 (331)
5 29.1 (211)
Top 5 longest reads and their mean basecall quality score
1 26178 (9.5)
2 25332 (9.7)
3 24712 (10.9)
4 24366 (10.1)
5 23996 (9.4)

Plots

Weighted histogram of read lengths

5k10k15k20k25k02M4M6M8M10M12M
Weighted histogram of read lengthsRead lengthNumber of reads

Weighted histogram of read lengths after log transformation

10010001000002k4k6k8k10k12k
Weighted histogram of read lengths after log transformationRead lengthNumber of reads

Non weighted histogram of read lengths

5k10k15k20k25k02k4k6k8k10k
Non weighted histogram of read lengthsRead lengthNumber of reads

Non weighted histogram of read lengths after log transformation

1001000100000500100015002000250030003500
Non weighted histogram of read lengths after log transformationRead lengthNumber of reads

Yield by length

05k10k15k20k00.050.10.15
Yield by lengthRead lengthCumulative yield for minimal length [Gb]

Number of reads generated per channel

051015202530051015
050010001500Number of reads generated per channelChannelNumber of reads

Cumulative yield

0246810121400.050.10.15
Cumulative yieldRun time (hours)Cumulative yield in gigabase

Cumulative yield

02468101214010k20k30k40k50k60k
Cumulative yieldRun time (hours)Cumulative yield in number of reads

Number of reads over time

02468101214050010001500200025003000
Number of reads over timeRun time (hours)Number of reads per 10 minutes

Number of active pores over time

02468101214050100150200250300
Number of active pores over timeRun time (hours)Active pores per 10 minutes

Violin plot of read lengths over time

0-33-66-99-1212-1505k10k15k20k25k
Violin plot of read lengths over timeInterval (hours)Read length

Violin plot of quality over time

0-33-66-99-1212-1510121416
Violin plot of quality over timeInterval (hours)Basecall quality