NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Active channels 432.0
Mean read length 2,731.9
Mean read quality 10.3
Median read length 1,972.0
Median read quality 9.9
Number of reads 63,195.0
Read length N50 4,175.0
STDEV read length 2,507.4
Total bases 172,644,669.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 63195 (100.0%) 172.6Mb
>Q7 63195 (100.0%) 172.6Mb
>Q10 29982 (47.4%) 77.3Mb
>Q12 6360 (10.1%) 17.1Mb
>Q15 295 (0.5%) 0.7Mb
Top 5 highest mean basecall quality scores and their read lengths
1 90.0 (417)
2 37.4 (1006)
3 36.2 (524)
4 32.4 (331)
5 29.1 (211)
Top 5 longest reads and their mean basecall quality score
1 26178 (9.5)
2 25332 (9.7)
3 24712 (10.9)
4 24366 (10.1)
5 23996 (9.4)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Number of reads generated per channel

Cumulative yield

Cumulative yield

Number of reads over time

Number of active pores over time

Violin plot of read lengths over time

Violin plot of quality over time