NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Active channels 34.0
Mean read length 1,027.0
Mean read quality 10.1
Median read length 678.0
Median read quality 9.9
Number of reads 671.0
Read length N50 1,512.0
STDEV read length 1,378.7
Total bases 689,139.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 671 (100.0%) 0.7Mb
>Q7 671 (100.0%) 0.7Mb
>Q10 304 (45.3%) 0.3Mb
>Q12 20 (3.0%) 0.0Mb
>Q15 6 (0.9%) 0.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1 19.8 (291)
2 19.6 (1298)
3 19.5 (283)
4 17.7 (2719)
5 17.6 (9152)
Top 5 longest reads and their mean basecall quality score
1 23368 (10.0)
2 11327 (9.3)
3 11290 (11.1)
4 9152 (17.6)
5 8462 (9.3)

Plots

Weighted histogram of read lengths

5k10k15k20k020k40k60k80k100k120k140k
Weighted histogram of read lengthsRead lengthNumber of reads

Weighted histogram of read lengths after log transformation

100010000020406080100120
Weighted histogram of read lengths after log transformationRead lengthNumber of reads

Non weighted histogram of read lengths

5k10k15k20k050100150200250300
Non weighted histogram of read lengthsRead lengthNumber of reads

Non weighted histogram of read lengths after log transformation

100010000010203040
Non weighted histogram of read lengths after log transformationRead lengthNumber of reads

Yield by length

05k10k15k20k0100μ200μ300μ400μ500μ600μ700μ
Yield by lengthRead lengthCumulative yield for minimal length [Gb]

Number of reads generated per channel

02468101202468
010203040506070Number of reads generated per channelChannelNumber of reads

Cumulative yield

051015200100μ200μ300μ400μ500μ600μ700μ
Cumulative yieldRun time (hours)Cumulative yield in gigabase

Cumulative yield

051015200100200300400500600700
Cumulative yieldRun time (hours)Cumulative yield in number of reads

Number of reads over time

0510152005101520
Number of reads over timeRun time (hours)Number of reads per 10 minutes

Number of active pores over time

0510152002468101214
Number of active pores over timeRun time (hours)Active pores per 10 minutes

Violin plot of read lengths over time

0-33-66-99-1212-1515-1818-2105k10k15k20k
Violin plot of read lengths over timeInterval (hours)Read length

Violin plot of quality over time

0-33-66-99-1212-1515-1818-21101214161820
Violin plot of quality over timeInterval (hours)Basecall quality